Research publications using GENESIS
The following list contains the 312 research publications that we know of (as of April, 2009), originating from outside of the Bower laboratory.
We have listed only peer-reviewed papers in journals, books, and published conference proceedings. This does not include the many conference abstracts or unpublished proceedings, talks, and poster presentations. If you know of others, please let us know through the forums and mailing list.
Year | Title | Author(s) | Journal/Book Reference |
|---|---|---|---|
| (1995) | Cholinergic modulation of activity-dependent synaptic plasticity in the piriform cortex and associative memory function in a net | Hasselmo, M.E. and Barkai, E. | J. Neurosci. 15: 6592-6604. |
| (1997) | Modeling the piriform cortex. | Hasselmo, M.E. and Linster, C. | E.G. Jones and P.S.Ulinski eds. Cortical Models. Cerebral Cortex Vol. 13, Plenum Press: New York. |
| (1997) | Encoding and retrieval of episodic memories: Role of cholinergic and GABAergic modulation in the hippocampus. | Hasselmo, M.E., Wyble, B.P. and Wallenstein, G.V. | Hippocampus 6: 693-708. |
| (2005) | Molecular switches at the synapse emerge from receptor and kinase traffic. | Hayer, A. and Bhalla, U. S. | PLoS Comput Biol. 1:137-154. |
| (2007) | Framework for Interactive Million-Neuron Simulation. | Hereld, M. Stevens, R. L., Lee, H. C. and van Drongelen, W. | J. Clinical Neurophysiol. 24(:189-196. |
| (2005) | Large Neural Simulations on Large Parallel Computers. | Hereld, M. Stevens, R. L., Teller, J. and van Drongelen, W. | Int. J. Bioelectromag. 7:44-46. |
| (1994) | The effect of neuronal growth on synaptic integration. | Hill, A. A. V., Edwards, D. H. and Murphey, R. K. | J. Comp. Neurosci. 1:239-254. |
| (2001) | A model of a segmental oscillator in the leech heartbeat neuronal network. | Hill, A. A. V., Masino, M. A., Olsen, O. H. and Calabrese, R. L. | J. Comput. Neurosci. 10: 281-302. |
| (2002) | Half-center oscillators underlying rhythmic movements. | Hill, A. A. V., Van Hooser, S. and Calabrese, R. L. | The Handbook of Brain Theory and Neural Networks, Second edition, (M.A. Arbib, Ed.), pp. 507-510. Cambridge, MA: MIT Press. |
| (2003) | Intersegmental coordination of rhythmic motor patterns. | Hill, A. A., Masino, M. A. and Calabrese, R. L. | J. Neurophysiol. 90:531-538. |
| (2002) | Model of intersegmental coordination in the leech heartbeat neuronal network. | Hill, A. A., Masino, M. A. and Calabrese, R. L. | J. Neurophysiol. 87: 1586-1602. |
| (2009) | Gap junctions between striatal fast spiking interneurons regulate spiking activity and synchronisation as a function of cortical | Hjorth J, Blackwell KT, Kotaleski JH | J Neurosci, in press J. Neurosci. 29: 5276-5286. |
| (2007) | The significance of gap junction location in striatal fast spiking interneurons. | Hjorth, J., Elias, A. H. and Kotaleski, J. H. | Neurocomputing 70:1887-1891. |
| (1998) | Modeling the contributions of calcium channels and NMDA receptor channels to calcium current in dendritic spines. | Holmes, W. R. and Aradi, I. | Computational Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 191-195. |
| (2005) | Using P-GENESIS for Parallel Simulation of GENESIS Models - a Brief Overview. | Hood, G. | Brains, Minds, and Media. 1:bmm227 (urn:nbn:de:0009-3-2271) |
| (2000) | A large scale model of the cerebellar cortex using PGENESIS. | Howell F.W., Dyrhfjeld-Johnsen J., Maex R., Goddard N., and De Schutter E. | Neurocomuting 32: 1041-1046. |
| (2013) | http://www.loanbytext.org.uk/ | http://www.loanbytext.org.uk/ | |
| (2006) | Modelling self-sustained rhythmic activity in lamprey hemisegmental networks. | Huss, M., Cangiano, L. and Hellgren-Kotaleski, J. | Neurocomputing 69:1097-1102. |
| (2003) | Role of A-current in lamprey locomotor network neurons. | Huss, M., Hess, D., d'Incamps, B. L., El Manira, A., Lanser, A. and Kotaleski, J. | Neurocomputing 52-54: 295-300. |
| (2007) | Roles of ionic currents in lamprey CPG neurons: a modeling study. | Huss, M., Lansner, A., Wallen, P., El Manira, A., Grillner, S. and Hellgren-Kotaleski, J. | J. Neurophysiol. 97:2696-2711. |
| (2003) | A Study of the Action Potential Initiation Site Along the Axosomatodendritic Axis of Neurons Using Compartmental Models. | Ibarz, J. M. and Herreras, O. | Lecture Notes in Computer Science 2626:9-15. |
| (2006) | Relation of apical dendritic spikes to output decision in CA1 pyramidal cells during synchronous activation: a computational stu | Ibarz, J. M., Makarova, I. and Herreras, O. | Eur. J. Neurosci. 23:1219-1233. |
| (2005) | Rules and roles of dendritic spikes in CA1 pyramidal cells: a computational study. | Ibarz, J. M., Makarova, I., Cepeda, I. R. and Herreras, O. | Lecture Notes in Computer Science 3561:143-149. |
| (1995) | Analyzing the hippocampal place-cell phenomenon by modeling the central visual pathway. | Jaboori, S. A., Sampat, P. and Sayegh, S. I. | J. M. Bower Ed. The Neurobiology of Computation. Kluwer Academic Publishers, Boston, 233-237. |
| (1999) | The function of reciprocal corticocortical connections: Computational modeling and electrophysiological studies. | Jackson, M. E. and Cauller, L.J. | Oscillations in Neural Systems. D. S. Levine, V. R. Brown and T. Shirey. New York, Lawrence Erlbaum. |
| (1997) | Evaluation of simplified computational models of reconstructed neocortical neurons. | Jackson, M.E. and Cauller, L.J. | Brain Res. Bull. 44: 717. |
| (1996) | Dynamical analysis of spike trains in a simulation of reciprocally connected "chaoscillators": Dependence of spike pattern fract | Jackson, M.E., Patterson, J. and Cauller, L.J. | J. M. Bower (Ed.), Computational Neuroscience: Trends in Research 1995 Academic Press, NY, 209-214. |
| (2005) | Realistic Single Cell Modeling - from Experiment to Simulation. | Jaeger, D. | Brains, Minds, and Media. 1:bmm222 (urn:nbn:de:0009-3-2228) |
| (2003) | No parallel fiber volleys in the cerebellar cortex: Evidence from cross-correlation analysis between Purkinje cells in a compute | Jaeger, D. | J. Comput. Neurosci. 14:311-327. |
| (2009) | Signaling logic of activity-triggered dendritic protein synthesis: An mTOR gate but not a feedback switch PLoS. | Jain, P. and Bhalla, U.S. | Comput Biol. 5(2). |
| (2004) | Detailed model of intersegmental coordination in the timing network of the leech heartbeat central pattern generator. | Jezzini, S. H., Hill, A. A., Kuzyk, P. and Calabrese, R. L. | J. Neurophys. 91:958-977. |
| (2005) | Distinct properties of two major excitatory inputs to hippocampal pyramidal cells: a computational study. | Kali, S. and Freund, T. F. | Eur. J. Neurosci. 22:2027-2048. |
| (2004) | The contributions of different interneuron types to the activity patterns and plasticity of pyramidal cells in the hippocampus. | Kali, S. and Freund, T. F. | Neurocomputing 58-60:669-674. |
| (2003) | Mathematical models of cochlear nucleus onset neurons: I. Point neuron with many weak synaptic inputs. | Kalluri, S. and Delgutte, B. | J. Comput. Neurosci. 14:71-90. |
| (2003) | Mathematical models of cochlear nucleus onset neurons: II Model with dynamic spike-blocking state. | Kalluri, S. and Delgutte, B. | J. Comput. Neurosci. 14:91-110. |
| (2002) | Modelling the influence of thalamo-cortical projections on prefrontal activity. | Kamper, L., Bozkurt, A., Nielson, P., Dyhrfjeld-Johnson, J. Stephan, K. E. and Kotter, R. | Neurocomputing 44-46:869-873 |
| (2000) | Computational model for the bushy cell of the cochlear nucleus. | Kim D.O. and D'Angelo, W.R. | Neurocomputing 32-33: 189-196. |
| (2006) | From electric patterns to drugs: perspectives of computational neuroscience in drug design. | Kiss, T. and Erdi, P. | BioSystems 86:46-52. |
| (2006) | Modelling hippocampal theta oscillation: applications in neuropharmacology and robot navigation. | Kiss, T., Orban, G. and Erdi, P. | Int. J. Intelligent Systems 21:903-917. |
| (2001) | Intrahippocampal gamma and theta rhythm generation in a network model of inhibitory interneurons. | Kiss, T., Orban, G., Lengyel, M. and Erdi P. | Neurocomputing 38-40:713-719. |
| (1997) | Memory and epilitogenesis in complex biological and simulated systems. | Klopp, J. C., Johnston, P., Halgren, E., Marinkovic, K and Nenov, V. I. | In Computational Neuroscience: Trends in Research 1997 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 359-364. |
| (1998) | Large scale simulations of hippocampal-neocortical interactions in a parallel version of GENESIS. In: Computational | Klopp, J. C., Johnston, P., Nenov, V. I., Goddard, N., Hood, G. and Halgren, E. | Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 59-64. |
| (2006) | Using potassium currents to solve signal-to-noise problems in inhibitory feedforward networks of the striatum. | Kotaleski, J. H., Plenz, D. and Blackwell, K. T. | J. Neurophysiol. 95: 331-341. |
| (1999) | Motor fluctuations in Parkinson's disease: A postsynaptic mechanism derived from a striatal model. | Kotter, R. | Prog. Brain Res. 121: 283-294. |
| (1998) | Species-dependence and relationship of morphological and electrophysiological properties in nigral compacta neurons. | Kotter, R. and Feizelmeier, M. | Prog. Neurobiol. 54: 619-632. |
| (1996) | Relationship between morphological and electrophysiological properties of dopaminergic neurons. | Kotter, R. and Feizelmeier, M. | J. M. Bower (Ed.), Computational Neuroscience: Trends in Research 1995 Academic Press, NY, 89-94. |
| (1999) | Towards an integration of biochemical and biophysical models of neuronal information processing: a case study in the nigro-stria | Kotter, R. and Schirok, D. | Rev. Neurosci. 247-266. |
| (1995) | Interactions of glutamate and dopamine in a computational model of the striatum. J. Comput. | Kotter, R. and Wickens, J. | Neurosci. 2: 195-214. |
| (1995) | Effects of an excitatory synaptic conductance and a slow membrane potassium conductance in an inhibitory striatal network model. | Kotter, R. and Wickens, J. | Herrmann HJ, Wolf DE, Poppel E (eds.) Supercomputing in Brain Research: From Tomography to Neural Networks. World Scientific, Singapore, pp. 257-263. |
| (1998) | Striatal mechanisms in Parkinson's disease: New insights from computer modeling. | Kotter, R. and Wickens, J.R. | Artif. Intell. Med. 13: 37-55. |