Research publications using GENESIS
The following list contains the 312 research publications that we know of (as of April, 2009), originating from outside of the Bower laboratory.
We have listed only peer-reviewed papers in journals, books, and published conference proceedings. This does not include the many conference abstracts or unpublished proceedings, talks, and poster presentations. If you know of others, please let us know through the forums and mailing list.
Year | Title | Author(s) | Journal/Book Reference |
|---|---|---|---|
| (1995) | Effects of asymmetric neuronal connectivity and dopamine on striatal function: Simulation and analysis of a model for Huntington | Kotter, R., Alexander, M. E. and Wickens, J. R. | J. M. Bower Ed. The Neurobiology of Computation. Kluwer Academic Publishers, Boston, 239-244. |
| (2002) | Multi-level modeling of quantitative neuroanatomical data. | Kotter, R., Nielsen, P., Dyhrfjeld-Johnsen, J., Sommer, F.T. and Northoff, G. | Ascoli, G. (ed.), Computational Neuroanatomy: Principles and Methods. Humana Press, Totowa NJ. |
| (2005) | Optical release of caged glutamate for stimulation of neurons in the in vitro slice preparation. | Kotter, R., Schubert, D., Dyhrfjeld-Johnsen, J., Luhmann, H.J. and Staiger, J. | J. Biomed. Optics 10:11003. |
| (2007) | A hemicord locomotor network of excitatory interneurons: a simulation study. | Kozlov, A. K., Lansner, A., Grillner, S. and Kotaleski, J. H. | Biol. Cybern. 96:229-43. |
| (2006) | Effects of Beta-Catenin On Dendritic Morphology and Simulated Firing Patterns in Cultured Hippocampal Neurons. | Krichmar, J. L., Velasquez, D. and Ascoli, G. A. | Biol. Bull., 211:31-43. |
| (2002) | Effects of dendritic morphology on CA3 pyramidal cell electrophysiology: a simulation study. | Krichmar, J., Nasuto, S., Scorcioni, R., Washington, S. and Ascoli, G. | Brain Res. 941:11-28. |
| (2005) | Time precision of hippocampal CA3 neurons. | Kuriscak, E., Zbornik, M. and Rehak, J. | Prague Medical Report. 106:409-420. |
| (2001) | Exploration of signal transduction pathways in cerebellar long-term depression by kinetic simulation. | Kuroda, S., Schweighofer, N. and Kawato, M. | J. Neurosci. 21:5693-702. |
| (1999) | Serotonergic modulation of the cerebellar granule cell network. | Larsen-Prior, L.J. and Lu, H. | Neurocomputing 26-27: 419-426. |
| (2005) | Epileptic Activity Patterns in Coupled Neuronal Networks. | Lee, H. C., Hereld, M., Stevens, R. L. and van Drongelen, W. | Int. J. Bioelectromag. 7:42-43. |
| (1999) | Location-dependent differences between somatic and dendritic IPSPs. | Lengyel, M., Kepecs, A. and Erdi, P. | Neurocomputing 26-27: 193-197. |
| (1998) | Mechanisms of the cochlear nucleus octopus cell's onset response: synaptic effectiveness and threshold. | Levy, K.L and Kipke, D.R. | J. Acoust. Soc. Am. 103: 1940-1950. |
| (1996) | A biologically plausible model of neurons in the cochlear nucleus that computes accurate spike times for complex stimuli in real | Levy, K.L. and Kipke, D.R. | J. M. Bower (Ed.), Computational Neuroscience: Trends in Research 1995 Academic Press, NY, 101-106. |
| (1995) | The importance of membrane properties and synaptic location in octopus cells of the mammalian cochlear nucleus. | Levy, K.L., and Kipke, D.R. | The Neurobiology of Computation, (J. M. Bower, Ed.), Kluwer Academic Press, Boston, MA, pp. 93-99. |
| (2009) | A biologically realistic network model of acquisition and extinction of conditioned fear associations in lateral amygdala neuron | Li, G., Nair, S. S. and Quirk, G. J. | J. Neurophysiol. 101:1629-1646. |
| (2008) | Computational modeling - a tool for new psychiatric medication development. | Li, G., Nair, S. S. and Quirk, G. J. | Psychiatric Annals 28:296-304. |
| (2006) | Persistent Responses to Brief Stimuli: Feedback Excitation Among Brainstem Neurons. | Li, W. C., Soffe, S. R., Wolf, E. and Roberts, A. | J. Neurosci. 26:4026-4035. |
| (1999) | Alpha rhythm emerges from large-scale networks of realistically coupled multicompartmental model cortical neurons. | Liley, D.T., Alexander, D.M., Wright J.J. and Aldous M.D. | Network 10: 79-92. |
| (2000) | Mathematical model of a small neuron. | Linne M.-L. and Jalonen T.O. | Gabbouj. M. and Kuosmanen, P. (eds.), Proceedings of X European Signal Processing Conference, Signal Processing X Theories and Applications, Tampere, Finland, Sept 4-8, vol. I, pp. 63-66. |
| (2003) | Simulations of the cultured granule neuron excitability. | Linne, M-J. and Jalonen, T. O. | Neurocomputing, 52-54: 583-590. |
| (2006) | Properties and roles of BKCa channels in cultured cerebellar granule neuron: Experimental and simulation studies. | Linne, M.-L and Jalonen, T. O. | Neurocommputing 69:1014-1019. |
| (2004) | A Model integrating the cerebellar granule neuron excitability and calcium signaling pathways. | Linne, M.-L., Manninen, T. and Jalonen, T. O. | Neurocomputing 58-60:569-574. |
| (1998) | The role of feedforward and feedbackinhibition on frequency-dependent information processing in a cerebellar granule cell. | Lu, H., Prior, F. W. and Larson-Prior, L.J. | In Computational Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 453-458. |
| (1997) | Information processing in a cerebellar granule cell. | Lu, H., Prior, F. W. and Larson-Prior, L.J. | J. M. Bower (Ed.), Computational Neuroscience, Trends in Research, 1997. Plenum Press: New York, pp. 115-121. |
| (1998) | Emulation of Hopfield networks with spiking neurons in temporal encoding. | Maass, W. and Natschlager, T. | Computational Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 221-226. |
| (1997) | Networks of spiking neurons can emulate arbitrary Hopfield nets in temporal coding. | Maass, W. and Natschlager, T. | Network 8:355-372. |
| (2006) | Ca2+ -independent phospholipase A2-dependent sustained Rho-kinase activation exhibits all-or-none response. | Maeda, A., Ozaki, Y., Sivakumaran, S., Akiyama, T., Urakubo, H., Usami, A., Sato, M., Kaibuchi, K. and Kuroda, S. | Genes Cells 11:1071-83. |
| (2000) | Weak common parallel fibre synapses explain the loose synchrony observed between rat cerebellar Golgi cells. | Maex R., Vos B.P. and De Schutter E. | J. Physiol. (London) 523: 175-192. |
| (1998) | Synchronization of Golgi and granule cell firing in a detailed network model of the cerebellar granule cell layer. | Maex, R. and De Schutter, E. | J. Neurophysiol. 80: 2521-2537. |
| (2007) | Bistability and self-sustained ultrafast waves in networks electrically coupled through axo-axonal gap junctions. | Maex, R. and De Schutter, E. | European J. Neurosci. 25: 3347-3358. |
| (2003) | Resonant synchronization in heterogeneous networks of inhibitory neurons. | Maex, R. and De Schutter, E. | J. Neurosci. 23:10503-10514 |
| (1999) | The critical synaptic number for rhythmogenesis and synchronization in a network model of the cerebellar granular layer. | Maex, R. and De Schutter, E. | ICANN 98 in Skovde, Sweden, Springer-Verlag, London, 361-366. |
| (2007) | Periodicity in Na+ channel properties alters excitability of a model neuron. | Majumdar, S. and Sikdar, S. K. | Biochem. Biophys. Res. Commun. 359:908-914. |
| (2005) | An integral model of spreading depression: from neuron channels to field potentials. | Makarova, I., Cepeda, I. R., Panetsos, F. and Herreras, O. | Lecture Notes in Computer Science 3561:116-122. |
| (2007) | A steady-state model of spreading depression predicts the importance of an unknown conductance in specific dendritic domains. | Makarova, I., Ibarz, J. M., Canals, S. and Herreras, O. | Biophys J, 92:4216-4232. |
| (2003) | Selective Inactivation of Neuronal Dendritic Domains: Computational Approach to Steady Potential Gradients. | Makarova, I., Ibarz, J. M., Lopez-Aguado, L. and Herreras, O. | Lecture Notes in Computer Science, 2626:40-45. |
| (2005) | Unsupervised spike sorting with ICA and its evaluation using GENESIS simulations. | Mamlouk, A. M., Sharp, H., Menne, K. M. L. and Hofmann, G. | Neurocomputing 65-66:275-282. |
| (2002) | Phase relationships between segmentally organized oscillators in the leech heartbeat pattern generating network. | Masino, M. A. and Calabrese, R. L. | J. Neurophysiol. 87: 1572-1585. |
| (2002) | Period differences between segmental oscillators produce intersegmental phase differences in the leech heartbeat timing network. | Masino, M. A. and Calabrese, R. L. | J. Neurophysiol. 87: 1603-1615. |
| (2002) | A functional asymmetry in the leech heartbeat timing network is revealed by driving the network across various cycle periods. | Masino, M. A. and Calabrese, R. L. | J. Neurosci. 22: 4418-4427. |
| (2000) | A realistic computer simulation of cortical lesion induced imbalances in properties of somatotopic maps. | Mazza, M. B. and Roque, A. C. | Neurocomputing 32-33: 453-460. |
| (1999) | A computational model of topographic reorganization in somatosensory cortex in response to digit lesions. | Mazza, M. B. and Roque, A. C. | Neurocomputing 26-27: 435-441. |
| (1998) | A realistic computer simulation of primary somatosensory cortex replicating static properties of topographic organization. | Mazza, M. B. and Roque, A. C. | Braga, A. P. and Ludermir, T. B. (Eds.). Proceedings of the V Brazilian Simposium on Neural Networks, Belo Horizonte, MG. IEEE Computer Society, Los Alamitos, CA, pp. 169-173. |
| (1999) | Biologically plausible models of topographic map formation in the somatosensory and auditory cortices. | Mazza, M. B., de Pinho, M. and Roque, A. C. | Int. J. Neural Syst. 9:265-271. |
| (2001) | Alterations of maps induced by blockage of synaptic receptors in a computer simulation of the somatosensory cortex. | Mazza, M., de Pinho, M. and Roque, A. C. | Neurocomputing 38-40: 1453-1460. |
| (2002) | Using information theory for the analysis of the somatosensory system. | Mazza, M., de Pinho, M., Piqueira, R. C. and Roque, A. C. | Neurocomputing 44-46: 923-928. |
| (2004) | A dynamical model of fast cortical reorganization. | Mazza, M., dePinho, M., Piqueira, J. R. C. and Roque, A. C. | J. Computat. Neurosci. 16:177-201. |
| (2002) | Tsallis information measure applied to the analysis of EEG signals in a model of the somatosensory system. | Mazza, M., Tedeschi, W., de Pinho, M. and Neves, U. P. C. | Neurocomputing 44-46: 915-921. |
| (2002) | Test of spike sorting algorithms on the basis of simulated network data. | Menne, K.M.L., Folkers, A., Malina, T., Maex, R. and Hofmann, U. G. | Neurocomputing 44-46:1119-1126. |
| (2002) | Biologically realistic simulation of a part of hippocampal CA3; Generation of testdata for the evaluation of spike detection alg | Menne, K.M.L., Malina, T. and Hofmann, U. G. | Fifth German Workshop on Artificial Life GWAL 5 - Abstracting and Synthesizing the principles of living systems D. Polani, J. Kim, T. Martinetz (Eds.) p. 17-25. |