Research publications using GENESIS
The following list contains the 312 research publications that we know of (as of April, 2009), originating from outside of the Bower laboratory.
We have listed only peer-reviewed papers in journals, books, and published conference proceedings. This does not include the many conference abstracts or unpublished proceedings, talks, and poster presentations. If you know of others, please let us know through the forums and mailing list.
Year | Title | Author(s) | Journal/Book Reference |
|---|---|---|---|
| (1998) | Neuromodulatory control of hippocampal function: Towards a model of Alzheimer's disease. | Menschik, E. D. and Finkel, L. H. | Artificial Intelligence in Medicine 13:99-121. |
| (1998) | Attractor Dynamics in Realistic Hippocampal Networks. | Menschik, E., Yen, S-C. and Finkel, L.H. | Computational Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 465-470. |
| (1999) | Model- and scale-independent performance of a hippocampal CA3 network architecture. | Menschik, E., Yen, S-C. and Finkel, L.H. | Neurocomputing 26-27: 443-453. |
| (2000) | Cholinergic neuromodulation of an anatomically reconstructed hippocampal CA3 pyramidal cell. | Menschik, E.D and Finkel, L.H. | Neurocomputing 32-33: 197-205. |
| (1999) | Cholinergic neuromodulation and Alzheimer's disease: from single cells to network simulations. | Menschik, E.D. and Finkel, L.H. | Progress in Brain Research, 121:19-45. |
| (2002) | U.S. Simulations of inositol phosphate metabolism and its interaction with InsP3 mediated calcium release. | Mishra, J. and Bhalla, | Biophys.J. 83:1298-1316. |
| (1993) | Voltage clamp frequency domain analysis of NMDA activated neurons. | Moore, L. E., Hill, R. H. and Grillner, S. | J. Exp. Biol. 175:59-87. |
| (1993) | The effects of neurotransmitters on the integrative properties of spinal neurons of the lamprey. | Moore, L. E. and Buchanan, J. | J. Exp. Biol. 175:89-113. |
| (1994) | Anomalous increase in membrane impedance of neurons during NMDA activation. | Moore, L. E., Buchanan, J. and Murphey, C.R. | Computation in Neurons and Neural Systems, F. Eeckman, Ed., Kluwer Academic Publishers, pp. 21-26. |
| (1995) | The stem cell: A computational model of biological neurons useful for spatio-temporal pattern recognition. | Murphy, S.D. and Kairiss, E.W. | The Neurobiology of Computation, (J. M. Bower, Ed.), Kluwer Academic Press, Boston, MA, pp. 105-110. |
| (1997) | Dynamical behavior of networks of active neurons. | Murphy, S.D. and Kariss, E.W. | J. M. Bower (Ed.), Computational Neuroscience, Trends in Research, 1997. Plenum Press: New York, pp. 423-428. |
| (1994) | Effects of input synchrony on the response of a three-conductance cortical neuron model. | Murthy, V. N. and Fetz, E. E. | Neural Computation 6:1111-1126. |
| (1993) | Effects of input synchrony on the response of a model neuron. | Murthy, V. N. and Fetz, E. E. | Computation and Neural Systems, 475-479, F. H. Eeckman and J. M. Bower (eds.), Kluwer Academic Publishers |
| (2001) | Relation between neuronal morphology and electrophysiology in the Kainate lesion model of ALzheimer's disease. | Nasuto, S. J., Knape, R. M., Krichmar, J. L. and Ascolit, G. A. | Neurocomputing 38-40: 1477-1487. |
| (2010) | PRC Analysis of a Full Morphological GP Neuron Model Reveals Distinct Perisomatic and Dendritic Modes of Synaptic Integration | Nathan W. Schultheiss, Jeremy R. Edgerton, & Dieter Jaeger | JOURNAL OF NEUROSCIENCE Volume: 30 Issue: 7 Pages: 2767-2782 |
| (2000) | Spatiotemporal dynamics in a model of turtle visual cortex. | Nenadic, Z., Ghosh, B. and Ulinski, P. | Neurocomputing 32-33: 479-486. |
| (2002) | Propagating waves in visual cortex: A large scale model ofl turtle visual cortex. | Nenadic, Z., Ghosh, B. and Ulinski, P. | Mathematical and Computer Modeling 35: 743-749. |
| (2003) | Propagating Waves in Visual Cortex: A Large Scale Model of Turtle Visual Cortex. | Nenadic, Z., Ghosh, B. K. and Ulinski. P. | J. Computat. Neurosci. 14:161-184. |
| (2002) | Modeling and Estimation Problems in the Turtle Visual Cortex. | Nenadic, Z., Ghosh, B.K. and Ulinski. P. | IEEE Trans. Bio-Med. Eng. 49:753-762. |
| (1996) | The use of the World Wide Web for computational neuroscience instruction. | Nenov, V., Klopp, J., Komaromi, D., Shell, S., and Read, W. | J. M. Bower (Ed.), Computational Neuroscience: Trends in Research 1995, Academic Press, NY, 459-464. |
| (1993) | Hyperpolarizing Sag Currents in Inhibitory Neurons in Turtle Visual Cortex. | Nicolaus, J. M. and Ulinski, P. S. | Computation in Neurons and Neural Systems, F. Eeckman, Ed., Kluwer Academic Publishers, pp. 91-96. |
| (2002) | A biologically plausible neural network model of the primate primary visual system. | Oliveira, R. F. and Roque, A. C. | Neurocomputing 44-46:957-963. |
| (2006) | Intrinsic and synaptic mechanisms determining the timing of neuron population activity during hippocampal theta oscillation. | Orban, G., Kiss, T. and Erdi, P. | J. Neurophysiol. 96:2889-2904. |
| (2001) | Hippocampal rhythm generation: gamma related theta frequency resonance. | Orban, G., Kiss, T., Lengyel, M. and Erdi P. | Biological Cybernetics 84:123-132. |
| (2002) | Spike-timing dependant competitive learning of integrate-and-fire neurons with active dendrites. | Panchev, C., Wermter, S. and Chen, H. | Proceedings of the International Conference on Artificial Neural Networks, Springer, Madrid Spain, pp. 896-901. |
| (2001) | A computational model for the AVCN marginal shell with medial olivocochlear feedback: Generation of a wide dynamic range. | Pathmanathan, J.S. and Kim, D.O. | Neurocomputing 38-40:807-815. |
| (1998) | Analysis of coupled chaoscillators embedded within thalmocortical and corticocortical reentrant loops encompassing dyamics on mu | Patterson, J., Jackson, M.E., and Cauller, L.J. | Computational Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 89-93. |
| (1998) | Presence of a chaotic region between subthreshold oscillations and rhythmic bursting in a simulation of thalamocortical relay an | Paul, K., Jackson, M., and Cauller, L.J | Computational Neuroscience: Trends in Research 1998 (J. M. Bower, Ed.), Plenum Publishing Co., NY pp. 95-100. |
| (1993) | A Network Model of Automatic Gain Control in the Electrosensory System. | Payne, J. R., Xu, Z. and Nelson, M. E. | Computation in Neurons and Neural Systems, F. Eeckman, Ed., Kluwer Academic Publishers, pp. 203-208. |
| (1996) | Tolerance to sound intensity of binaural coincidence detection in the nucleus laminaris of the owl. | Pena, J.L., Viete, S., Albeck, Y. and Konishi, M. | J. Neurosci. 16: 7046-7054. |
| (2005) | Simulation tools for biochemical networks: evaluation of performance and usability. | Pettinen, A., Aho, T., Smolander, O. P., Manninen, T., Saarinen, A., Taattola, K. L,, Yli-Harja, O. and Linne, M. L. | Bioinformatics 21:357-63. |
| (1995) | A compartmental model of ventral cochlear nucleus stellate cells: Responses to constant and amplitude-modulated tones. | Peyton, S. F. and D. R. Kipke, D. R. | J. M. Bower (Ed.) The Neurobiology of Computation. Kluwer Academic Publishers, Boston, 117-122. |
| (2006) | A biologically plausible simulation of rod photoreceptor for use in a large-scale retina network model. | Publio, R., Oliveira, R. F. and Roque, A. C. | Neurocomputing 69:1020-1024. |
| (2004) | Extracting wave structure from biological data with application to responses in turtle visual cortex. | Robbins, K. A. and Senseman, D. M. | J. Comput. Neurosci. 16:267-298. |
| (2006) | Dendritic Processing of Excitatory Synaptic Input in Hypothalamic Gonadotropin Releasing-Hormone Neurons. | Roberts, C. B., Best, J. A. and Suter, K. J. | Endocrinology 147:1545-1555. |
| (2007) | Depolarizing, GABA-mediated synaptic responses and their possible role in epileptiform events: Simulation studies. | Robertson, R. and Menne, K. M. L. | Neurocomputing 70:1619-1625. |
| (2005) | A molecular model for axon guidance based on cross talk between rho GTPases. | Sakumura, Y., Tsukada, Y., Yamamoto, N. and Ishii, S. | Biophys. J. 89:812-822. |
| (2006) | Anomalous diffusion in Purkinje cell dendrites caused by dendritic spines. | Santamaria, F., Wils, S., De Schutter, E. and Augustine, G. J. | Neuron 52:635-648. |
| (2001) | Modelling of evoked field potentials in hippocampal CA1 area describes their dependence on NMDA and GABA receptors. | Sargsyan A. R., Papatheodoropoulos C. and Kostopoulos, G.K. | J. Neurosci. Meth. 104:143-153. |
| (2003) | A model synapse that incorporates the properties of short- and long-term synaptic plasticity. | Sargsyan, A. R., Melkonyan, A. A., Papatheodoropoulos, C., Mkrtchian, H. H. and Kostopoulos, G. K. | Neural Networks 16:1161-1177. |
| (2005) | Prediction and validation of the distinct dynamics of transient and sustained ERK activation. | Sasagawa, S., Ozaki, Y. Fujita, K. and Kuroda, S. | Nat. Cell Biol, 7:365-373. |
| (1993) | Facilitation and Unblocking: A Quantitative Model. | Sayegh, S., Manalis, R. and Sampat P. | Computation in Neurons and Neural Systems, F. Eeckman, Ed., Kluwer Academic Publishers, pp. 235-240. |
| (1992) | Connectionist Simulation of Adaptive Processes in the Flight Control System of Migratory Locusts. | Schneider, A. | Proceedings of ANNIE'93, ASME Press, St. Louis, MO. |
| (2009) | A Computational Study of Pre-Synaptic Re-uptake of Dopamine on Phosphorylation of DARPP-32 | Shesharao M. Wanjerkhede and Raju S. Bapi | Proceedings of International Joint Conference on Neural Networks, Atlanta, Georgia, USA, June 14-19, 2009 |
| (2011) | Role of CAMKII in reinforcement learning: a computational model of glutamate and dopamine signaling pathways | Shesharao M. Wanjerkhede and Raju S. Bapi | Biological Cybernetics, DOI 10.1007/s00422-011-0439-5 |
| (2002) | Simulation of a vertebrate receptor cell of the olfactory epithelium for use in network models. | Simoes-de-Souza, F. M. and Roque, A. C. | Neurocomputing, 44-46: 177-182. |
| (2004) | A biophysical model of vertebrate olfactory epithelium and bulb exhibiting gap junction dependent odor-evoked spatiotemporal pat | Simoes-de-Souza, F. M. and Roque, A. C. | Biosystems, 73:25-43. |
| (2004) | Self-sustained waves in a computational model of the olfactory epithelium with gap junctions. | Simoes-de-Souza, F. M. and Roque, A. C. | Neurocomputing 58-60:1033-1039. |
| (2004) | Kinetic measurement of ribosome motor stalling force. | Sinha, D., Bhalla, U. S. and Shivashankar, G. V. | App. Phys. Lett. 85:4789-4791. |
| (2003) | The database of quantitative cellular signaling: Management and analysis of chemical kinetic models of signaling networks. | Sivakumaran, S., Hariharaputran, S., Mishra, J. and Bhalla, U.S. | Bioinformatics 19:408-415. |